Type: Package
Package: TFactSR
Title: Enrichment Approach to Predict Which Transcription Factors are
        Regulated
Version: 0.99.1
Authors@R: 
    person(given = "Atsushi",
           family = "Fukushima",
           email = "afukushima@gmail.com", 
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-9015-1694"))
Description: R implementation of 'TFactS' to predict which are the
        transcription factors (TFs), regulated in a biological
        condition based on lists of differentially expressed genes
        (DEGs) obtained from transcriptome experiments. This package is
        based on the 'TFactS' concept by Essaghir et al. (2010)
        <doi:10.1093/nar/gkq149> and expands it. It allows users to
        perform 'TFactS'-like enrichment approach. The package can
        import and use the original catalogue file from the 'TFactS' as
        well as users' defined catalogues of interest that are not
        supported by 'TFactS' (e.g., Arabidopsis).
License: GPL-3
URL: https://afukushima.github.io/TFactSR/
Depends: R (>= 4.3.0)
Imports: qvalue, stats
Suggests: BiocStyle, knitr, rmarkdown, spelling, testthat
VignetteBuilder: knitr
biocViews: Network, Software, DifferentialExpression, GeneTarget,
        GeneExpression, Microarray, RNASeq, Transcription,
        NetworkEnrichment
Encoding: UTF-8
RoxygenNote: 7.2.3
Language: en-US
Config/pak/sysreqs: libicu-dev
Repository: https://afukushima.r-universe.dev
Date/Publication: 2023-09-01 05:17:20 UTC
RemoteUrl: https://github.com/afukushima/tfactsr
RemoteRef: HEAD
RemoteSha: a9773380be8d622d21a7595b64a1e8ae000706b3
NeedsCompilation: no
Packaged: 2026-07-04 18:19:34 UTC; root
Author: Atsushi Fukushima [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9015-1694>)
Maintainer: Atsushi Fukushima <afukushima@gmail.com>