Package: DiffCorr 0.4.4
DiffCorr: Analyzing and Visualizing Differential Correlation Networks in Biological Data
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
Authors:
DiffCorr_0.4.4.tar.gz
DiffCorr_0.4.4.zip(r-4.5)DiffCorr_0.4.4.zip(r-4.4)DiffCorr_0.4.4.zip(r-4.3)
DiffCorr_0.4.4.tgz(r-4.4-any)DiffCorr_0.4.4.tgz(r-4.3-any)
DiffCorr_0.4.4.tar.gz(r-4.5-noble)DiffCorr_0.4.4.tar.gz(r-4.4-noble)
DiffCorr_0.4.4.tgz(r-4.4-emscripten)DiffCorr_0.4.4.tgz(r-4.3-emscripten)
DiffCorr.pdf |DiffCorr.html✨
DiffCorr/json (API)
NEWS
| # Install 'DiffCorr' in R: |
| install.packages('DiffCorr', repos = c('https://afukushima.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/afukushima/diffcorr/issues
- AraMetLeaves - A metabolite data set from Arabidopsis leaves by GC-TOF/MS
- AraMetRoots - A metabolite data set from Arabidopsis roots by GC-TOF/MS
Last updated 1 months agofrom:cc3b07a22d. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
| R-4.4-win | OK | Oct 31 2024 |
| R-4.4-mac | OK | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | OK | Oct 31 2024 |
Exports:cluster.moleculecomp.2.cc.fdrcompcorrcor.distcor2.testgenerate_gget.eigen.moleculeget.eigen.molecule.graphget.lfdrget.min.maxplotClusterMoleculesplotDiffCorrGroupscalingMethodsuncent.cor2distuncent.cordistwrite.modules
Dependencies:BiobaseBiocGenericsclicpp11fdrtoolgenericsglueigraphlatticelifecyclemagrittrMASSMatrixmulttestpcaMethodspkgconfigRcpprlangsurvivalvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A metabolite data set from Arabidopsis leaves by GC-TOF/MS | AraMetLeaves |
| A metabolite data set from Arabidopsis roots by GC-TOF/MS | AraMetRoots |
| Hierarchical clustering of molecules | cluster.molecule |
| Export differential correlations between two conditions | comp.2.cc.fdr |
| Compare two correlation coefficients | compcorr |
| Additional distance functions correlation distance (1-r) | cor.dist |
| Correlation Test | cor2.test |
| Generating graph from data matrix | generate_g |
| Get eigen molecule | get.eigen.molecule |
| Getting graph from eigengene module list | get.eigen.molecule.graph |
| Getting local false discovery rate (lfdr) | get.lfdr |
| Get minimum and maximum | get.min.max |
| Plot cluster molecules | plotClusterMolecules |
| Plot DiffCorr group | plotDiffCorrGroup |
| scalingMethods | scalingMethods |
| Additional distance functions correlation distance (uncentered) | uncent.cor2dist |
| Calculating all pairwise distances using correlation distance | uncent.cordist |
| Writing modules into a text file | write.modules |
