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DiffCorr: Analyzing and Visualizing Differential Correlation Networks in Transcriptomic and Metabolomic Data1 years ago
Installation | Release version (CRAN): | Development version (Github): | Introduction | DiffCorr for Golub's data (ALL/AML leukemia dataset) | Reading the Golub dataset | Clusters on each subset | Cut the tree at a correlation of 0.6 using cutree function | Visualizing module networks | Examine groups of interest graphically | Export the results (FDR < 0.05) | Exploring the metabolome data of flavonoid-deficient Arabidopsis | AraMetLeaves dataset | Differential correlation analysis for tt4 mutant and the wild-type plants | Conclusion | References
TFactSR: Enrichment Approach to Predict Which Transcription Factors Are Regulated3 years ago
Introduction | Methods - Statistical significance | P-value | E-value | BH-corrected P-value | Random Control (RC) | Prerequisites | Getting started | Acknowledgments | Reference | Session info